From: BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs
Method | Pretrained | MRR | H@1 | H@3 | H@10 |
---|---|---|---|---|---|
TransE | Â | 20.61 | 12.15 | 22.14 | 36.27 |
    + BioBLP-P |  | 14.76 | 8.42 | 15.60 | 25.92 |
    + BioBLP-P | \(\checkmark\) | 14.87 | 8.47 | 15.67 | 26.16 |
    + BioBLP-M |  | 6.56 | 4.46 | 6.78 | 9.90 |
    + BioBLP-M | \(\checkmark\) | 8.72 | 6.22 | 9.42 | 13.10 |
    + BioBLP-D |  | 7.42 | 4.91 | 7.39 | 11.62 |
    + BioBLP-D | \(\checkmark\) | 15.74 | 11.73 | 16.44 | 23.04 |
ComplEx | Â | 42.75 | 31.55 | 48.09 | 65.50 |
    + BioBLP-P |  | 16.53 | 11.13 | 17.17 | 26.92 |
    + BioBLP-P | \(\checkmark\) | 34.88 | 25.11 | 39.52 | 54.83 |
    + BioBLP-M |  | 1.68 | 1.24 | 1.86 | 2.49 |
    + BioBLP-M | \(\checkmark\) | 1.78 | 1.37 | 1.93 | 2.54 |
    + BioBLP-D |  | 0.01 | 0.00 | 0.00 | 0.02 |
    + BioBLP-D | \(\checkmark\) | 0.45 | 0.36 | 0.43 | 0.55 |
RotatE | Â | 55.20 | 44.46 | 61.95 | 74.76 |
    + BioBLP-P |  | 45.29 | 35.60 | 51.33 | 62.89 |
    + BioBLP-P | \(\checkmark\) | 47.30 | 36.56 | 54.59 | 66.10 |
    + BioBLP-M |  | 10.40 | 7.02 | 10.40 | 16.30 |
    + BioBLP-M | \(\checkmark\) | 14.34 | 11.14 | 14.79 | 19.78 |
    + BioBLP-D |  | 11.60 | 8.79 | 12.43 | 16.67 |
    + BioBLP-D | \(\checkmark\) | 49.68 | 40.62 | 55.30 | 66.26 |