Skip to main content

Table 2 Top 10 pathogenic organisms identified from MeSH indexing and GenBank sorted by number of PubMed identifiers recovered from the NBCI resources. (*) Salmonella enterica subsp. enterica serovar Typhimurium

From: Classifying literature mentions of biological pathogens as experimentally studied using natural language processing

MeSH indexing

GenBank

NCBI id

Name

PMIDs

NCBI id

Name

PMIDs

562

Escherichia coli

288,697

562

Escherichia coli

39,836

1280

Staphylococcus aureus

80,265

11,676

Human immunodeficiency virus 1

3904

1773

Mycobacterium tuberculosis

52,603

1773

Mycobacterium tuberculosis

3822

28,901

Salmonella enterica

46,122

1423

Bacillus subtilis

3342

11,320

Influenza A virus

45,982

1280

Staphylococcus aureus

2731

287

Pseudomonas aeruginosa

44,739

287

Pseudomonas aeruginosa

2413

210

Helicobacter pylori

35,576

624

Shigella sonnei

2240

5833

Plasmodium falciparum

30,357

294

Pseudomonas fluorescens

2236

90,371

Salmonella enterica subsp. (*)

28,902

621

Shigella boydii

2207

10,407

Hepatitis B virus

27,946

622

Shigella dysenteriae

2190